Myb profile
(Peptide) : myb2.gde Length: 51
Sequences: 17 MaxScore: 53.00
Profile created by: PROFILEWEIGHT version 2.0
Date: Mon Oct 30 11:25:52 1995
Start Residue: 1 End Residue: 54
** GCG ** GO: 0.94 (Suggested Gap Opening Penalty for GCG programs)
** GCG ** GE: 0.09 (Suggested Gap Extension Penalty for GCG programs)
** WISE ** GO: 935 (Suggested Gap Opening Penalty for WISE programs)
** WISE ** GE: 93 (Suggested Gap Extension Penalty for WISE programs)
Sequence Weighting: N-J TREE
Position Weighting: OFF
Comparison Matrix: gon250.bla Negative Full Normalisation for Mutability
User Specified Gap Coefficients:-
Local Gap Coefficient: 10
Local Gap Length Coefficient: 100
Remove Gap Positions ( residues in at least 50% of all sequences )
Treat end gaps as partial sequence
Sequence Weights:
1 HuCMYB_A 63
2 HuCMYB_B 54
3 HuCMYB_C 47
4 DmMYB_A 89
5 DmMYB_B 57
6 DmMYB_C 49
7 ZmC1_A 67
8 ZmC1_B 62
9 AtGL1_A 60
10 AtGL1_B 55
11 Sd305_A 61
12 Sd305_B 65
13 SpCDC5 84
14 ScYBL054 100
15 ScBAS1_A 81
16 ScBAS1_B 94
17 ScREB1 89
Average Profile Score (total) = -5
Average Profile Score (no gaps) = -5
Cons A B C D E F G H I K L M N P Q R S T V W X Y Z Gap Len ..
V -7 0 -9 -24 -19 -4 -20 -13 14 -19 10 8 -17 -17 -16 -18 -17 -9 15 -15 0 -9 0 100 100
K -8 0 -17 -1 4 -23 -11 3 -21 23 -21 -14 6 -10 13 21 -3 -2 -19 -17 0 -13 0 100 100
K -7 0 -19 -1 6 -30 -9 1 -25 32 -23 -16 3 -3 16 28 -1 -2 -22 -20 0 -19 0 100 100
G 7 0 -10 1 -3 -36 25 -6 -35 0 -37 -26 6 -7 -2 0 14 5 -26 -24 0 -26 0 100 100
N 4 0 -14 7 11 -30 -6 0 -27 14 -27 -19 10 3 11 9 10 5 -20 -25 0 -20 0 100 100
W -30 0 -4 -35 -32 19 -25 -6 -4 -28 0 -1 -27 -25 -24 -13 -31 -28 -11 44 0 18 0 100 100
T 13 0 -5 6 2 -31 -9 -3 -17 2 -27 -14 11 1 1 -3 35 44 -7 -31 0 -23 0 100 100
R 0 0 -13 -4 4 -20 -14 -1 -15 9 -14 -9 -3 0 8 8 0 0 -11 -19 0 -14 0 100 100
E 2 0 -20 28 38 -39 -6 4 -36 18 -38 -26 14 -3 24 6 11 4 -28 -31 0 -25 0 100 100
E 0 0 -24 36 51 -41 -7 4 -38 17 -39 -27 14 -5 27 4 4 -1 -29 -32 0 -26 0 100 100
D -3 0 -23 47 37 -40 -1 4 -44 9 -45 -32 24 -5 18 0 7 0 -36 -32 0 -24 0 100 100
E -6 0 -17 5 11 -20 -18 -2 -10 0 -10 -6 0 -11 8 -3 -7 -5 -7 -22 0 -16 0 100 100
L -7 0 -14 -14 -6 -11 -24 -6 3 2 3 5 -9 -13 0 0 -12 -5 1 -17 0 -12 0 100 100
L -16 0 -9 -47 -37 15 -44 -21 41 -30 46 33 -39 -22 -26 -27 -34 -16 32 -8 0 -2 0 100 100
I -5 0 -9 -27 -19 0 -29 -10 17 -9 14 15 -21 -16 -11 -8 -16 -7 14 -12 0 -5 0 100 100
K 0 0 -16 12 18 -29 -7 13 -30 24 -30 -20 13 -4 24 18 7 3 -25 -22 0 -15 0 100 100
L -9 0 -8 -33 -26 10 -32 -10 17 -19 26 18 -26 -16 -17 -17 -22 -14 12 -6 0 2 0 100 100
V 0 0 0 -20 -14 -2 -23 1 10 -10 2 4 -13 -14 -9 -10 -9 -2 15 -13 0 -1 0 100 100
K 4 0 -17 6 18 -30 -10 0 -23 21 -22 -15 3 -5 17 14 2 0 -17 -25 0 -21 0 100 100
E 1 0 -13 -1 5 -21 -15 -2 -10 4 -11 -6 2 -8 6 0 0 2 -7 -23 0 -16 0 100 100
H -16 0 -10 -15 -11 5 -23 14 -5 -2 0 0 -6 -15 -2 -2 -15 -11 -9 -2 0 10 0 100 100
G 4 0 -13 5 -1 -38 39 -8 -43 -7 -42 -32 8 -6 -6 -7 6 -10 -34 -23 0 -27 0 100 100
T 1 0 -13 7 7 -28 -6 -1 -22 2 -24 -17 12 3 4 -3 11 12 -16 -26 0 -19 0 10 100
g -3 0 -17 8 10 -32 6 7 -35 20 -33 -23 12 -7 18 19 3 -3 -30 -20 0 -19 0 100 100
W -32 0 -4 -33 -31 19 -21 -4 -12 -27 -4 -6 -26 -25 -23 -10 -31 -31 -19 53 0 20 0 100 100
R 9 0 -10 3 6 -29 -5 0 -23 14 -25 -16 8 -3 10 12 15 10 -16 -24 0 -20 0 100 100
E -1 0 -14 -3 6 -21 -19 -5 -7 6 -9 -5 -3 -9 5 1 0 3 -3 -23 0 -17 0 100 100
I -13 0 -8 -46 -37 10 -45 -23 51 -30 37 31 -37 -24 -30 -29 -31 -10 44 -12 0 -6 0 100 100
A 36 0 0 -3 -2 -30 10 -10 -19 -7 -24 -15 -2 3 -5 -9 23 10 -5 -29 0 -25 0 100 100
K -3 0 -16 1 6 -27 -7 6 -26 21 -25 -16 7 1 14 17 4 1 -22 -20 0 -16 0 100 100
H -6 0 -12 0 3 -14 -15 11 -16 8 -17 -11 3 -8 7 7 0 3 -14 -14 0 -4 0 100 100
L -8 0 -6 -37 -30 14 -35 -15 26 -26 30 24 -30 -18 -22 -23 -23 -10 22 -7 0 0 0 10 100
p 1 0 -15 2 3 -28 1 -3 -27 3 -25 -21 1 20 3 0 4 -1 -21 -21 0 -19 0 100 100
G -1 0 -14 5 -1 -30 24 -3 -38 0 -37 -27 10 -11 -2 0 2 -8 -31 -20 0 -20 0 100 100
R -9 0 -15 -3 5 -29 -9 5 -29 36 -26 -20 3 -7 22 53 -3 -3 -26 -10 0 -15 0 100 100
T 4 0 0 -13 -12 -14 -20 -8 1 -8 -5 1 -6 -2 -8 -10 12 26 6 -22 0 -15 0 100 100
D 6 0 -15 19 15 -37 11 -3 -38 0 -39 -29 10 3 4 -4 11 0 -29 -28 0 -25 0 100 100
N -4 0 -17 11 12 -28 -10 4 -23 17 -25 -16 19 -8 14 8 5 5 -19 -25 0 -17 0 100 100
Q 11 0 -13 13 20 -33 -5 4 -28 12 -29 -18 10 0 25 7 18 11 -19 -28 0 -23 0 100 100
C 1 0 34 -29 -27 -1 -21 -13 9 -26 2 4 -21 -19 -24 -19 -7 -5 14 -7 0 -4 0 100 100
R -4 0 -17 0 9 -28 -12 5 -24 30 -21 -14 3 -6 24 32 0 -1 -20 -18 0 -17 0 100 100
N -9 0 -16 8 9 -17 -13 6 -20 5 -18 -12 14 -11 9 0 -2 -3 -18 -19 0 -9 0 100 100
R -12 0 -13 -5 0 -17 -12 11 -25 25 -22 -16 1 -10 15 38 -6 -6 -23 -5 0 -2 0 100 100
W -31 0 -3 -32 -31 21 -22 -1 -11 -26 -4 -6 -24 -24 -22 -11 -30 -29 -18 48 0 25 0 100 100
R -5 0 -12 -4 0 -17 -14 5 -13 10 -11 -6 4 -9 10 13 -3 -2 -12 -15 0 -10 0 100 100
N 0 0 -15 14 13 -34 -4 6 -31 23 -34 -22 25 -4 15 15 16 12 -25 -26 0 -19 0 100 100
Y -10 0 -5 -24 -20 7 -29 1 10 -14 9 7 -15 -15 -12 -12 -14 -3 10 -6 0 8 0 10 100
l -16 0 -11 -41 -32 11 -41 -18 33 -22 40 30 -34 -20 -21 -21 -30 -15 25 -9 0 -3 0 100 100
N 2 0 -12 12 8 -34 3 3 -33 14 -35 -24 20 -4 12 12 17 10 -26 -24 0 -20 0 100 100
P 0 0 -11 -3 -1 -25 -7 -4 -23 3 -22 -16 -3 17 1 3 1 -2 -18 -20 0 -18 0 100 100
N -3 0 -16 9 10 -27 -1 3 -25 9 -26 -18 14 -9 8 4 1 -1 -20 -23 0 -17 0 100 100
* 38 0 15 37 72 7 59 26 53 85 83 11 56 32 31 87 30 45 30 47 0 21 0