CONTENT
1. THE HOMOCYSTEINE LOCUS
2. THE MEMBERS AND THEIR AFFILIATIONS
3. DEFINITION OF AND COMPETENCE WITHIN THE RESEARCH FIELD
4. POST DOCS, FELLOWS AND THEIR RESEARCH ACTIVITIES
5. THE COLLABORATIVE STRUCTURE
6. CHRONOLOGICAL AND THEMATIC LISTING OF MAIN SCIENTIFIC ACHIEVEMENTS

6.1. METHODS

6.2. CLINICAL AND EXPERIMENTAL STUDIES

6.3. EPIDEMIOLOGICAL STUDIES AND INTERVENTION TRIALS
7. ACHIEVEMENTS, POTENTIAL AND RESOURCES
8. EVALUATION BY AN INTERNATIONAL EXPERT PANEL FORMED BY THE RESEARCH COUNCIL OF NORWAY
9. INTERNATIONALIZATION
10. MAIN ONGOING AND PLANNED PROJECTS

10.1. THE SNPs PROJECT

10.2. THE EU PROJECT "HOLO TC, EARLY B12 MARKER"

10.3. THE HORDALAND HOMOCYSTEINE STUDIES

10.4. NOVEL HOMOCYSTEINE DETERMINANTS AND VITAMIN MARKERS

10.5. PREGNANCY, NEW-BORNS AND CHILDREN

10.6. CANCER AND B-VITAMINS

1. THE HOMOCYSTEINE LOCUS

Our research group was appointed Research LOCUS at the University of Bergen in May 1998. The «LOCUS for Homocysteine and Related Vitamins» was authorized as a result of evaluation of 15 research groups under the Medical Faculty, University of Bergen (UoB).
The criteria are 1) a well defined research area, 2) the research activity exploits identifiable local unique resources or expertise, 3) the research area must have a long-term potential, 4) the core staff must comprise at least 5 senior scientists affiliated at UoB, and mainly dedicated to the actual research activity, 5) the research group should have the potential to function for at least 10 years, 6) the group should be localized in a defined area, and 7) documented scientific publications within a restricted and defined area are paramount.
The senior scientists of the Homocysteine LOCUS are listed in the Table below

2. THE MEMBERS AND THEIR AFFILIATIONS

The group comprises persons affiliated at different departments/institutes, i.e. Institute of Medicine (IoM) and Department of Public Health and Primary Health Care (DoP), University of Bergen (UoB), and Laboratory of Clinical Biochemistry (LoC),  Haukeland University Hospital (HUS).

Scientist Title Affiliations Time*
Tone Bjørge Professor, dr.med. Sect Epidemiol Med Stat (DoP) 2006
Anne-Lise Bjørke Monsen Consultant, dr.med. Sect Clin Biochem (LoC) 1995
Steinar Hustad Consultant, dr.philos. The Hormone Laboratory (LoC) 1996
Ernst Lien Professor, dr.med. The Hormone Laboratory (LoC) 1986
Ottar Nygård Professor, dr.med. Sect Cardiology (IoM) 1991
Asbjørn Svardal Professor, dr.philos. Sect Pharmacology (IoM) 1985
Grethe S. Tell Professor, dr.philos. Sect Epidemiol Med Stat (DoP) 1995
Per Magne Ueland Professor, dr.med. Sect Pharmacology (IoM) 1977
Stein Emil Vollset Professor, DrPH. Sect Epidemiol Med Stat (DoP) 1991
*Joining the research group.
3. DEFINITION OF AND COMPETENCE WITHIN THE RESEARCH FIELD

The actual research field is homocysteine and functional markers for co-factors (vitamins) involved in homocysteine metabolism. Accordingly, the vitamins include folates, cobalamin (B12), pyridoxal phosphate (B6), riboflavin (B2), and recently choline. Deficiency states involving these vitamins are more commonly occurring than previously anticipated, and are associated with four conditions, i.e. cardiovascular disease, (colon)cancer, neuropsychiatric symptoms and impaired cognitive function, and pregnancy complications and adverse pregnancy outcome.

The research activities of the Homocysteine LOCUS can be categorized into two areas:

Area A: Development of biochemical analyses to measure levels of vitamins and functional markers of vitamin status (i.e. methylmalonic acid (MMA), homocysteine, cystathionine etc.) in blood and tissues, and genetic analyses to detect polymorphisms and genetic defects related to vitamin function. .

Area B: Clinical and epidemiological studies of homocysteine and vitamin status, and the associations with life style, diseases and use of drugs. Clinical homocysteine lowering trials.

The group covers expertise from analytical technology to large-scale population studies, as detailed in the table below.

Scientists Area Competence and responsibility
Tone Bjørge B Cancer epidemiology, statistics
Anne-Lise Bjørke Monsen B Pediatrics, epidemiology, statistics
Steinar Hustad AB Vitaminology, bioanalyses,
Ernst Lien A,B Endocrinology, vitaminology, bioanalyses
Ottar Nygård B Cardiology, epidemiology, statistics
Asbjørn Svardal A Mass spectrometry, bioanalyses
Grethe S. Tell B Nutrition, epidemiology
Per Magne Ueland A,B Vitaminology, bioanalyses, DNA technology
Stein Emil Vollset B Epidemiology, statistics
4. POST DOCS, FELLOWS AND THEIR RESEARCH ACTIVITIES

Four post-docs and ten fellows are currently working at LOCUS Homocysteine. Their research activities are listed in the table below.

Post docs Research area Project Affiliations
Simone Eussen B-Vitamins and cancer, EPIC 10.6.1 Sect Pharmacology (IoM)
Åse Fredriksen Molecular biology, MALDI-TOF, SNPs assays
10.1
Sect Pharmacology (IoM)
Klaus Meyer MALDI-TOF, molecular biology, SNPs assays
10.1
Sect Pharmacology (IoM)
Bjørn Øivind Midttun Vitamins B2 and B6, LC-MS/MS
10.4.2
Sect Pharmacology (IoM)
Arve Ulvik Molecular biology, SNPs and cancer
10.6
Sect Pharmacology (IoM)
Fellows
Hege Aase Sætran One-carbon metabolism in newborns and children 10.5.1 Sect Clin Biochem (LoC)
Øyvind Bleie WENBIT - a homocysteine lowering clinical trial
10.3.5
Sect Cardiology (IoM)
Marta Ebbing Diet and coronary artery disease, WENBIT
10.3.5
Sect Cardiology (IoM)
Clara Gram Gjesdal Homocysteine and bone mineral density. The Hordaland homocysteine study
10.3.3
Sect Epidemiol Med Stat (DoP)
Pål Ivar Holm Choline, betaine and hyperhomocysteinemia
10.4.1
Svetlana Konstantinova Betaine and other nutritional and lifestyle factors, the Hordaland homocysteine study
10.3.4
Sect Epidemiol Med Stat (DoP)
Roy Miodini Nilsen B-Vitamins, pregnancy and pregnancy complications
10.5.3
Sect Epidemiol Med Stat (DoP)
Eva Ringdal Pedersen WENBIT - a homocysteine lowering clinical trial 10.3.5 Sect Cardiology (IoM)
Rita Skålevik Folate status indicators, PABA-Glu, by LC-MS/MS
10.4.3
Sect Pharmacology (IoM)
Ingrid Kristin Torsvik Cobalamin status in newborns and children 10.5.2 Sect Pediatrics (DoC)
Amrei Windelberg Multiplex metabolite assay by GC-MS and GC-MS/MS
10.4.4
Sect Pharmacology (IoM)
Associated members
Ingvar Bjelland Homocysteine, B-vitamins and depression/anxiety
10.3.3
Sect Epidemiol Med Stat (DoP)
Bjørn Nedrebø Homocysteine, B-vitamins and thyroid status
10.4.5
Sect Endocrinol (IoM)
Bettina Riedel Cobalamin-markers Sect Clin Pharm (LoC)
5. THE COLLABORATIVE STRUCTURE

A close collaboration within this multi-disciplinary group has already existed for years. Ueland and Lien has worked together for 15 years. Dr. Schneede joined the group as a fellow in 1991, and got a tenure position in 1996. Dr. Svardal, a recognized expert in mass spectrometry, has been involved in instrumentation and method development. Vollset and Nygård have been collaborating since 1991, within the frame of the Hordaland Homocysteine study. Prof. Tell has been responsible for the planning and conduction of the large Homocysteine-HUSK study since she came to UoB in 1995.

6. CHRONOLOGICAL AND THEMATIC LISTING OF MAIN SCIENTIFIC ACHIEVEMENTS

6.1. METHODS
  • 1984- Construction of a radioenzymic method for determination of Hcy in tissues (Ueland et al. 1984).
  • 1985- Reporting that 75 % of plasma Hcy is bound to albumin, and that by determining both the bound and free form of Hcy, denoted total homocysteine (tHcy), stored samples can be used for epidemiological studies (Refsum et al. 1985). The method is the basis for the assay marketed by Axis Biochemicals, i.e., the first commercial immunoassay for tHcy determination.
  • 1989- Introduction of the first fully automated tHcy assay with high sample throughput (Fiskerstrand et al. 1993; Refsum et al. 1989). This assay has been used for performing the largest epidemiological study on tHcy to date (the Hordaland study), for the European concerted action project (COMAC) on homocysteine and vascular disease, in the clinical routine here in Norway, and has been established in several other laboratories.
  • 1991- Introduction of tHcy into clinical routine. In 2000, 46660 tHcy analyses were performed at Haukeland University Hospital.
  • 1994- Introduction of MMA into clinical routine. Capillary electrophoresis was used in routine clinical diagnostics for the first time. In 2000, 46424 MMA analyses were performed by GC-MS at the Haukeland University Hospital.
  • 1995- Design and construction of an in-house build laser-induced fluorescence (LIF) detector for capillary electrophoresis, based on sheath-flow technology (see Fig. 1). This instrument was built as part of the EU contract BMH4-CT95-0505 (completed July 1999) for high throughput genotyping of mutations predisposing to elevated tHcy. The performance in terms of sensitivity out ranges several commercial detectors available on the market.
  • 1996- Development of various methods for mutation analyses based on multiinjection capillary electrophoresis with LIF detection (Ren 1997; Ren and Ueland 1999; Ulvik 1997; Ulvik et al. 1998). The methods allow rapid genotyping of samples (average analysis time is about 2.5 min per sample), and the sensitivity is sufficiently high to allow genotyping based on DNA remnants in serum/plasma. This novel technology opens up for genetic studies based on plasma/serum biobanks (Ulvik 1997)
  • 1999- Completion of the Biomed project LIF detection in mutation analyses (contract BMH4-CT95-0505, co-ordinator Per Magne Ueland). The project's primary aim was to develop fast assays for mutation analysis based on capillary electrophoresis.
  • 1999- Development of technology for mutation detection based on MALDI-TOF mass spectrometry (Harksen et al. 1999).
  • 1999- Development of a CE-LIF method for the quantitation of the low concentration (in the nanomolar range) of vitamin B2 (riboflavin, FMD and FAD) in human plasma (Hustad et al. 1999)
  • 2001- Completion of the Biomed project Demonstration of the diagnostic utility of a novel and fast method for plasma total homocysteine in representative target populations (contract BMH4983549, co-ordinator Helga Refsum). The primary objective was to evaluate the performance and compare of assays for tHcy.
  • 2001- Development of a sensitive, high throughput LC-MS/MS method for the simultaneous determination of six vitamin B6 and three riboflavin species in human blood (Midttun et al, 2001, 2005).
  • 2003- Determination of choline, betaine and related compounds by LC-MS/MS (Holm et, al 2003).
  • 2004- A multiplex assay for the determination of 13 SNPs related to one carbon metabolism by MALDI-TOF mass spectrometry (Meyer et al, 2004).
  • 2005- An automated assay for the determination of methylmalonic acid, tHcy, and related amino acids by GC-MS (Windelberg et al., 2005).
  • 2006- Established a panel of 40 markers and metabolites related to one-carbon metabolism, based on mass-spectrometry. This metabolite profile is measured in less than 1 mL of serum/plasma.
Fig. 1. In house build laser-induced fluorescence
(LIF) detector for capillary electro-phoresis (CE) constructed as part of the EU contract BMH4-CT95-0505.

The detector is based on post column excitation of analytes in a sheath flow cell. The upper left panel shows the prototype which has an open design based on x-y positioners, the left middle panel the compact version 2 which is magnified in the left lower panel. For both designs, the inspection optics are shown to the right and the PMT to the left. The detectors are interfaced with a PRINCE autosampler for CE produced by PRINCE Technologies. The right upper panel depicts the construction of the sheath flow cell.

6.2. CLINICAL AND EXPERIMENTAL STUDIES
  • 1985- Numerous reports based on cell culture experiments, animal models and clinical studies on factors influencing Hcy formation, cellular export and elimination were published. The effect of vitamins, methionine and various drugs, inborn errors of Hcy metabolism and various diseases, such as cancer, psoriasis, vascular disease and renal failure, were documented. These data provided basic knowledge on Hcy metabolism and regulation, i.e. the fundamentals for the clinical utility of plasma tHcy as a indicator or risk factor for common diseases.
  • 1986- One of the first report that tHcy is a sensitive indicator of folate status, by demonstrating that the antifolate effect of MTX leads to increased tHcy in humans (Refsum et al. 1986). tHcy is now world wide routinely used to evaluate functional folate deficiency.
  • 1991- Demonstrating that even short term nitrous oxide anaesthesia may lead to a significant increase in tHcy, reflecting a functional vitamin B12 deficiency (Christensen et al. 1994; Ermens et al. 1991).
  • 1998- Demonstrating stability and utility of tHcy under experimental field conditions. These results suggest that determination of plasma tHcy is as reliable as for instance that of total serum cholesterol (Clarke et al. 1998).
  • 2000- Demonstrating that vitamin B2 status is an independent determinant of plasma homocysteine in subjects with the CT or TT genotype of the MTHFR 677C->T polymorphism (Hustad et al. 2000).
  • 2001- Report on low serum cobalamin and metabolic evidence of impaired cobalamin status (elevated MMA and tHcy) in neonates (Bjorke-Monsen et al. 2001).
  • 2004, 2005- The first publications reporting that circulating betaine is an important determinant of plasma homocysteine (Holm et al. 2004, 2005).
6.3. EPIDEMIOLOGICAL STUDIES AND INTERVENTION TRIALS
  • 1995- Demonstrating that several life-style factors such as smoking, coffee drinking, intake of fruits and vegetables and physical activity are among the important determinants of tHcy (the Hordaland Homocysteine Study) (Nygård et al. 1995).
  • 1996- Showing that markedly elevated tHcy (>40 µM) in the general population is usually due to a combination of a genetic disposition (MTHFR 677C->T mutation) and life-style factors predisposing to high tHcy levels. The majority of these individuals obtained a normal tHcy level by increasing their folate intake (the Hordaland Homocysteine Study) (Guttormsen 1996).
  • 1996- tHcy in children was found to be associated with cardiovascular mortality of their male relatives, suggesting a strong genetic predisposition of high tHcy levels (Tonstad et al. 1996; Tonstad et al. 1997).
  • 1997- Results from the European concerted action (COMAC) project "Homocysteine and Vascular Disease", demonstrated for the first time that tHcy strongly interacts with established risk factors for vascular disease, especially hypertension and smoking (Graham et al. 1997).
  • 1997- tHcy was reported to be a strong predictor of mortality in patients with confirmed coronary artery disease. The mortality risk within 5 years was 25 % in patients with tHcy >20 µM, vs 4 % in patients with tHcy <9 µM. The finding was published in the NEJM (Nygård et al. 1997).
  • 1997- Finding that the inborn error homocystinuria is probably much more common (>1/20,000) than previously anticipated (1/300,000). Moreover, in Norway, homocystinuria is most often related to one particular 'Norwegian mutation'. Patients with this mutation respond to treatment with pyridoxine (Kim et al. 1997). This finding motivates new-born screening for homocystinuria in Norway (pilot study starting in 1998/99).
  • 1998- The first report on a substantial increase in tHcy in subjects consuming large amount of filtered coffee (Nygård et al. 1997).
  • 2000- Reporting that plasma tHcy was associated with pregnancy complications and adverse outcomes in the large Hordaland homocysteine cohort (Vollset et al. 2000).
  • 2001-Reporting that Plasma tHcy is a strong predictor of both cardiovascular and noncardiovascular mortality in a general population of 65–72-y-olds (Vollset et al. 2001).
  • 2003- Reporting that hyperhomocysteinemia and the MTHFR 677TT genotype are related to depression in 6000 subjects from the Hordaland homocysteine cohort (Bjelland et al. 2003).
  • 2004- Demonstration that change in lifestyle has a modest (compared to folate supplementation) but significant effect on tHcy in 7000 subjects over 6 years period (Nurk et al. 2004).
  • 2004- The largest study to date (2168 case-control pairs) on the MTHFR 677C->T polymorphism and (colorectal ) cancer, demonstrating reduced risk of 27% and 35%, respectively, of colorectal cancer in subjects with the MTHFR 677 TT and MTR 2756 GG genotypes (Ulvik et al. 2004).
  • 2006- Report of the results from the NORVIT (Norwegian Vitamin Trial), a secondary trial in patients with a history of recent myocardial infarction (Bonaa et al. 2006).
  • 2007- Report of the results from a randomized clinical trial on folic acid for the prevention of colorectal adenomas (Cole et al. 2007).
7. ACHIEVEMENTS, POTENTIAL AND RESOURCES
This area of research (one-carbon metabolism and homocysteine) is one that is recognised to be initiated outside US. Our research group has worked within this field since the late 70ties, and 200 publications by group members are retrieved already in November 2005 by advanced search (homocyst* OR folate* OR cobalamin OR methylmalonic) in the PubMed data base (http://www.ncbi.nlm.nih.gov/PubMed/ medline.html). Thus, the group comprising the Homocysteine LOCUS has been active in this research area long before this subject become a hot topic (The Scientist Oct 13, 1997, p.10).
Our research group has developed two assays, tHcy and serum MMA, which now are offered on a national basis. These tests are important innovation in laboratory diagnostics. The numbers of patient samples measured per year now exceeds 2x46.000 in Norway. This fact demonstrates the ability of this research group to bring the scientific knowledge from basic laboratory (1985-1997) to routine diagnostic applications (from 1991 and onwards).
A science citation analysis carried out by Dag W. Aksnes at NIFU STEP (Norwegian Institute for Studies in Research and Higher Education) in 2005, demonstrated that articles published by members of LOCUS homocysteine are the most cited papers written by scientists holding tenure positions at academic institutions in Norway. These articles have been cited more than 7000 times since 1995.
For future analytical tasks, the group has established a modern instrumentation including GC-MS and LC-MS/MS (for fast measurement of multiple metabolites, B-vitamins and vitamin markers), MALDI-TOF MS (determination of primer extension or mini-sequencing products) and robots for automated samples handling and processing. The Division of Section for Medical Statistics has their own UNIX systems in closed networks for the processing and storage of large collections of personal data.
The population structure in Norway is well suited for large scale population studies, because of the population stability and homogeneity, and because of the large national and local patient registers, including the National Birth Register, the National Cancer Register, and the Heart Register in Bergen. The Homocysteine group has already to a large extent exploited these national resources and facilities by carrying out (in collaboration with the National Health Screening Service) the Hordaland Homocysteine study.

The Hordaland Homocysteine Study is a population based screening of total homocysteine (tHcy) in about 18,000 men and women aged 40-67 years that took place in 1992-1993 in the county of Hordaland in Western Norway (Fig. 2). In this cohort, tHcy was associated with several physiological and life-style factors, including age and gender, blood pressure and serum cholesterol, smoking, alcohol and coffee consumption, physical activity, diet and vitamin status. All associations with established cardiovascular risk factors were in the direction expected to confer increased risk. In a subset of 5883 women aged 40-42 years, tHcy was associated with previous pregnancy outcomes, including preeclampsia, placental abruption and neural tube defects. The Hordaland Homocysteine cohort will be used for future investigations of the stability of tHcy and vitamin status over time, and to investigate associations with mortality and morbidity including cancer incidence. Furthermore, the Hordaland Homocysteine Study II is a follow up of the Hordaland Homocysteine Study-1, including 7000 subjects. Further details are given in paragraph 10.3.

Fig. 2. The county of Hordaland at the western coast of Norway

8. EVALUATION BY AN INTERNATIONAL EXPERT PANEL FORMED BY THE RESEARCH COUNCIL OF NORWAY

In 1999 and 2000 the Research Council of Norway carried out a comprehensive review of Norwegian basic biological research. The report on Homocysteine LOCUS is as follows:

Description: All the research of the department is focused in a Homocysteine LOCUS. A LOCUS is a group identified as having unique resources and clear long-term potential. It is headed by Per Magne Ueland and in addition has four professors - Helga Refsum, Ernst Lien, Grethe Tell and Stein Emil Vollset (the latter two are not at the department) - two associate professors including Einar Solheim, who acts as departmental chairman.

This research has developed from basic research and the development of unique research tools into patient based and epidemiological clinical research. The research is centered around: a) development of precise methods to measure key variables in patient materials; such as laser-induced fluorescence (LIF) with a customs built super-sensitive detector developed. This has developed into a multi-injection capillary electrophoresis coupled to LIF useful for genotypic screening of large patient materials. b) Experimental studies on folates, vitamins B12, B6 and B2. The group has shown that Hcy predicts folate deficiency and that the levels are also controlled by anesthesia and renal function. c) Clinical and epidemiological studies: The highest impact (five papers since 1995 cited more than 100 times) has been of the epidemiological studies. In particular, they have shown that homocysteine is the best predictor of mortality of patients with coronary heart disease, and that it strongly interacts with other established risk factors.

Evaluation: The members of the research group represent complementary competencies that are required to achieve the research goals. One very interesting ongoing study is an examination of folate administration with potential major health implications. In addition, there are ongoing studies on the implications of polymorphisms and markers of vitamin status on colonic cancer. The group has very strong links with several outstanding international groups, partly via different EU projects. The most striking and impressive aspect is the continuous development of cutting edge analytical methodology and the very clear focus on areas where the group can have a decisive competitive edge to maintain the high international standing. Altogether this group is ranked as excellent. It should continue to receive good funding at a high level. In particular, it is suggested that this group, which provides excellent training, is given one or several open graduate student positions.

9. INTERNATIONALIZATION
About 40 % of articles published from the Homocysteine group are the result of international collaborations. Some projects highlight the internationalization:

The EU project «Homocysteine and Vascular Disease» which included patients from 9 European countries. Co-ordinator is Ian Graham, Dublin. In this study, the Bergen centre was responsible for blood collection and storage, Hcy determination and genetic analyses.
The first Int. Congr. on Homocysteine. Ireland, June 1995. 350 attendants. Organizing committee: Ueland, Graham, Refsum and Rosenberg.
The international congress entitled "Novel Technologies in Biomedical Analyses" . Sandefjord; Norway, June 1999. Organizing committee: Elgstøen, Ueland, Jellum and Refsum.
The EU project "LIF Detection in Mutation analyses", Biomed contract BMH4-CT95-0505, co-ordinator: Per M. Ueland.
The EU project "Homocysteine determination in laboratory diagnostics", Biomed contract BMH4-98-3549, co-ordinator: Helga Refsum.
The EU project "Demonstration of the clinical utility of holotc as an early marker of vitamin B12 deficiency", Biomed contract QLK3-CT-2002-01775, co-ordinator: Ebba Nexø.
The Bergen-Oxford collaboration for investigating the association between Hcy and cognitive function in the HUSK participants; co-ordinator Grethe S. Tell.
Collaboration within The European Prospective Investigation into Cancer and Nutrition (EPIC) (Elio Riboli) to investigate the association of homocysteine, related B-vitamins with colorectal cancer and other malignancies.
Collaboration with the Channing Laboratory Epidem/CTR for Cancer Prevention, Boston (David Hunter) on one carbon metabolism and colon cancer.
Collaboration with John A. Baron, Dartmouth Medical School, NH, on a project on folic acid and large bowel adenomas.
Collaboration with the The National Institute of Child Health and Human Development (NICHD), James L. Mills, on choline status in newborns.
Several projects on folate metabolism, with John Scott and Anne Molloy, at Trinity College, Dublin.
Collaboration with the California Birth Defects Monitoring Program, Gary Shaw, Richard Finnell and Henk Blom, on one-carbon metabolism and birth defects.
10. MAIN ONGOING AND PLANNED PROJECTS
10.1. THE SNPs PROJECT
The following section is a description of the background and strategy for an ongoing project with the objective to establish the methodology for the determination of SNPs (single nucleotide polymorphisms) profile related to one carbon metabolism, B-vitamins and associated diseases.

10.1.1. What are SNPs?
SNPs are single base pair positions in genomic DNA at which different sequence alternatives (alleles) exist in normal individuals. The allele frequencies are higher than 1 (or 10) % in the reference population. SNPs occur at 1 of about 1000 bp, and comprises the molecular basis of genetic diversity. Such a base substitution may arise in one individual (founder effect), and may expand because this genetic variant has some advantages in relation to survival or reproduction under certain, stable ecological conditions.

10.1.2. Relevance
Our research strategy is based on the assumption that the metabolism and function of B-vitamins involved in homocysteine metabolism are modified by SNPs in genes encoding for key regulatory enzymes. There is some support of this idea. First, the
MTHFR 677C->T polymorphism represents such a SNP with profound effects of folate status, and other SNPs associated with effects of B-vitamins (Table 1) have recently been reported as well. Secondly, it is conceivable that SNPs modifying vitamin metabolism and function may represent genetic adaption to vitamin content in food. Such a genetic mechanism may be functional under conditions of ecological stability and low population mobility, but certain SNPs may to-day represent genetic risk factors for chronic diseases, including cardiovascular disease and colorectal cancer.
We believe that determination of SNPs will become an important tool in research related to preventive medicine and diseases associated with life-style. For example, it may turn out to be rational (from results of future intervention trials) to advice subjects of the MTHFR TT genotype ("the plant eaters") to secure high intake of folate from food or supplements.

10.1.3. Strategy
Studies of SNPs in large populations, but also genotyping as part of medical counselling, require robust technology providing high sample through-put. Several chip based systems allow assessment of multiple SNPs in large number of DNA samples. Some systems of the oligonucleotide format (for example the microarray system of Affymetrix, GeneChip® HuSNP™ Mapping Assay) are based on probes detecting certain SNPs selected and verified by the company. These systems do not allow the user to optimise the SNPs profile to meet specific research needs by including recently detected relevant SNPs. In contrast, mass-array-chips system based on MALDI-TOF mass spectrometry allows the inclusion of additional SNPs into an established multiplexing method. Such upgrade requires minimal cost and labour.

10.1.4. MALDI-TOF MS of DNA samples
Matrix Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MS) is an MS format compatible with macromolecule including DNA. This technology is currently acquiring a position in molecular biology, especially since the resolution has been greatly enhanced by inclusion of the option denoted "delayed extraction" (DE).

.

Fig. 3A. Nanoliter dispensing. A miniaturized dried-droplet method is used to prepare MALDI-TOF-MS samples. Only 7.5nl of sample volume are dispensed using a piezoelectric pipet (Nanoplotter, Gesim). The needle applies the sample in drops of 0.5nl. A silicon chip (SpectroChipTM, Sequenom) with an array of 96 hydrophilic anchors is used as sample support. Each plate contains 10 chips, i.e. 960 samples, which are transferred to the MALDI-TOF probe. Time for plotting of one chip (96 samples) is about 10 min using a four-needle system. A 384 chip format is available for high throughput applications (up to 3840 samples per sample plate).
Fig. 3B. Principles of MALDI-TOF MS. Samples are desorbed/ionized by a short laser pulse. Ions are accelerated into the time-of-flight (TOF) analyzer with equal energy, thus travelling with different velocities. The ion mass is calculated by flight time between target and detector. While the linear ion mode provides high sensitivity, the reflection ion mode is used to obtain high-resolution spectra.
Fig. 3C. The instrument Bruker Reflex III. The instrument is equipped with a nitrogen laser emitting at 337 nm, delayed (pulsed ion) extraction, 2 stage gridless reflector and fuzzy logic control. A mass resolution up to 10000 is obtained, which allows discrimination of an A- from a T-base (= 7 daltons) in a 30 bp DNA fragment.
We have established and are currently further developing mass-array-chips system based on MALDI-TOF mass spectrometry. Dr. philos Klaus Meyer, which is a physicist educated in the TOF laboratory of professor Beninghoven at the University of Münster, has the responsibility of instrument maintenance, method development and construction of program for the generation of reports based on mass differences.
10.1.5. Nanotechnology. Since October 1999, have used nano-plotting for the application of DNA samples on the MALDI probe. This is accomplished by the Nano-Plotter from GeSiM/Sequenom which expels small sample volumes by piezoelectric pipettes (Fig. 3A).
We have optimized the sample application, to obtained a high density of homogeneous sample spots (Fig. 4).
We have also plans to modify the samples matrix, and to establish DNA sequencing based on mass differences. The latter technology may become convenient to detect novel SNPs in selected (hyperhomocysteinemic) subjects.
Fig.4. Sample spot morphology obtained with nanoliter dispensing. The dried-droplet preparation of microliter volumes (left) leads to inhomogeneous sample morphology using 3-hydroxypicolinic acid as matrix. Automation of analysis is hampered by time consumming search for "hot spots". Using Sequenom`s SpectroChipTM (Fig. 3A), compact and reproducible matrix spots can be prepared on at defined positions (right).
10.1.6. High level multiplexing of SNPs related to one carbon metabolism
We have recently developed a multiplex mass-array-chip system for the detection of SNPs related to one carbon metabolism and related B-vitamins (Meyer et al. 2004). The present assay is based on multiplex PCR and mini-sequencing using dideoxy NTPs. The method determines 13 SNPs in 8 gene loci. These are metyltetrahydrofolat reductase (MTHFR) 677C->T and 1298A->C, methionine synthase (MTR) 2756A->G, cystathionine ß-synthase (CBS) 844ins68, 1080C->T and 699C->T, methionine synthase reductase (MTRR) 66A->G, transcobalamin-II (TC-II) 776C->G and 67A->G, reduced folate carrier-I (RFC-I) 80G->A, betaine homocysteine metyltransferase (BHMT) 742G->A, and paraoxonase-I (PON-I) 575A->G and 163-T>A (Fig. 5).
These methods have been used in the clinical and epidemiological studies listed in paragraphs 10.3 and 10.6.3. In addition, the massarray-chip system has wide application in large-scale genotyping.
Fig. 5. Typical MALDI-TOF spectrum obtained for multiplexing 13 SNPs. The spectrum is obtained in the positive linear ion mode. Unextended and extended primers of the 13 investigated polymorphisms can be observed in the mass range between 4500 and 9500 Da. The chosen example shows wild type, heterozygous, and homozygous signals. Instrument resolution is sufficient to distinguish the heterozygote corresponding to a mass different of 9 Da. Nearly no salt adducts are observed. Three oligo-A-nucleotides were used as internal mass calibration standards.
10. 2. DEMONSTRATION OF THE CLINICAL UTILITY OF holoTC AS AN EARLY MARKER OF VITAMIN B12 DEFICIENCY
This shared cost project (QLK3-CT-2002-01775; co-ordinator, Ebba Nexø; principal contractor in Bergen, Jørn Schneede) has five partners. It started in October 2002.

10.2.1. Objectives

Objective 1. To validate the technical performance of the holoTC assay (throughput, robustness, precision and variability) outside the manufacturer’s laboratory in different laboratory settings in four different countries reflecting future end-users of the assay and to provide advice to the company on improvements needed for the commercialisation of the product..
Objective 2. To show the diagnostic utility of the holoTC assay compared with the conventional approach (determination of plasma B12 and haematological markers) for the early identification of individuals with impaired vitamin B12 status. The current gold standard for the assessment of B12 status (a combination of plasma B12, MMA and tHcy) will be used as a reference.
Objective 3. To demonstrate the ability of holoTC to identify, at an early stage, the development of vitamin B12 deficiency in relevant target populations, including elderly subjects with depression, or cognitive impairment , as well as other conditions known to be associated with vitamin B12 deficiency.
Objective 4. To demonstrate the socio-economic benefits of the holoTC assay as an early marker of vitamin B12 deficiency in selected populations.
Objective 5. To disseminate the results in order to promote the transfer of knowledge into daily clinical practice and to advance its exploitation by European industry
.

10.3. THE HORDALAND HOMOCYSTEINE STUDIES
10.3.1. The Hordaland Homocysteine Study (Initial data collection 1992-93)
The Hordaland Homocysteine Study is a collaborative study between the University of Bergen and the National Health Screening Service in Oslo. The participants underwent the National Health Screening Service standard examination that includes a questionnaire focusing on cardiovascular risk factors, measurements of height, weight, blood pressure, cholesterol and triglycerides. In addition plasma total homocysteine (tHcy) was measured by the Department of Pharmacology, University of Bergen in all participants. It was a population-based study including 18,043 men and women aged 40-67 years. Data collection took place in 1992-93.
Important results from the Hordaland Homocysteine Study include demonstration of important associations between homocysteine and components of the cardiovascular risk profile (Nygård et al. 1995), an association between coffee drinking and homocysteine (Nygård et al. 1997), high prevalence of the methylenetetrahydrofolate reductase (MTHFR) 677 TT genotype among individuals with very high homocysteine levels (> 40 µmol/L), effect modification by lifestyle factors such as use of vitamin supplements, coffee drinking and cigarette smoking played (Guttormsen 1996). Further studies of lifestyle factors on tHcy levels and differential effects at high and low tHcy levels have also been carried out (Nygård et al. 1998; Refsum et al. 1996). Baseline tHcy levels were strongly related to subsequent mortality (both overall and cardiovascular)(Vollset et al,), and to hospitalization due to cardiovascular disease (Nurk et al, 2002).
By linking information from the Medical Birth Registry of Norway, we have demonstrated that homocysteine levels in 40-42 years old women in 1992 showed important associations to pregnancy complications (preeclampsia and placental abruption) and adverse pregnancy outcomes (low birth weight and premature births) in the same women registered by the Medical Birth Registry during the period 1967-96 (Vollset et al. 2000).
We have also demonstrated that cysteine, which is metabolically closely related to homocysteine, has associations with lifestyle, physiological and biochemical factors (El-Khairy et al. 1999). Other studies have deomstrated relations of tCys to adverse pregnancy outcomes (El-Khairy et al. 2003) and cardiovascular disease (El-Khairy et al. 2003).

10.3.2. The Hordaland Homocysteine Study II (HUSK) (Data collection 1998-99)
About 7074 of the 18043 participants of the 1992-93 Hordaland Homocysteine Study attended a second survey in 1998-99. The response rate was 77 % and the exam included the standard cardiovascular screening carried out by the National Health Screening Service. Data collection included extensive lifestyle information and stored blood samples.
Data collection for the Hordaland Homocysteine Study II included the following new elements compared to 1992-93: 1) A cognitive function battery (30 minutes interview) among the individuals born in 1925-27. Collaboration with Oxford University (Professor David Smith). 2) Measurement of bone mineral density and body composition in almost six thousand individuals. Collaboration with the Department of Rheumatology, Haukeland University Hospital (professor Hans Jacob Haga) and the Department of Internal Medicine, Section on Endocrinology (Prof. Sylvi Aanderud). 3) Collection of detailed diet information using a quantitative food frequency questionnaire developed at the Institute for Nutrition Research at the University of Oslo. Collaboration with University of Oslo (Professor Christian Drevon). 4) Questionnaire-based assessment of depression (Hospital Anxiety and Depression Scale (HADS) score). Collaboration with University of Oslo (Professor Alv Dahl).

The second screening in 1998-99 (HUSK) of about 7000 participants of the Homocysteine cohort have provided data for studies on homocysteine, B-vitamins and health. Novel aspects have been addressed, such as bone density/ body composition, cognitive function and depression and anxiety (see above Hordaland Homocysteine Study II). The study will also focus on gene-environment interactions, i.e. possible effect modification of the tHcy-lifestyle relations by the
MTHFR 677C->T polymorphism.

10.3.3. The Hordaland Homocysteine Studies: Follow-up
A rich database is now being built around the Hordaland Homocysteine Study cohort. Analyses of the large amount of data, particularly added by the Hordaland Homocysteine Study II data collection in 1998-99, will be given priority in the years to come.
The possibility to link data collected in 1992-93 and 1998-99 on 18,044 adult and middle aged men with the Cancer Registry of Norway will provide the opportunity for a series of studies on cancer epidemiology. We have estimated that the cohort have accrued 150-250 cases of major cancers (a total of more than 1500 cases) which will give sufficient statistical power to study important associations between several cancers and B-vitamin status.
Mortality and cardiovascular morbidity follow-up is ongoing and will continue to provide information about the prognostic and predictive value of tHcy.
Longitudinal analyses will also be carried out. No other studies have longitudinal measures of tHcy and key determinants.

Hordaland Homocysteine Study III.
We will also consider to invite the second half of the 1992-93 homocysteine cohort to a second cardiovascular screening in co-operation with the National Health Screening Service.

10.3.4. The Hordaland Homocysteine studies: Novel markers and determinants
Some novel biomarkers related to homocysteine metabolism are probably stable under the storage conditions (- 20 oC) used for the Hordaland Homocysteine biobank. Among these, betaine and related factors (choline, DMG) have recently been identified as important determinants of plasma tHcy. These and other tHcy determinants (neopterine) will be determined in samples from The Hordaland Homocysteine Study II. The associations between these parameters, tHcy, lifestyle factors and the MTHFR 677C->T polymorphism will be investigated.

10.3.5. WENBIT - Western Norway B-vitamin Intervention Trial
This is a randomized 2x2 factorial trial of homocysteine-lowering B-vitamins in 3000 patients undergoing coronary angiography at the Haukeland University Hospital, Bergen, and at Stavanger University Hospital. The four treatment arms are placebo / folic acid (0.8 mg) plus vitamin B12 (0.4 mg) / vitamin B6 (40 mg) / folic acid plus vitamin B12 plus vitamin B6. The major endpoint is long-term outcome (mortality or major cardiovascular events). The study was initiated in year 2000 and randomization was completed early 2004. WENBIT was stopped prematurely in November 2005 due to reduced compliance from patients after the results of the NORVIT trial had been presented in media.
Extensive clinical and lifestyle information as well as biological samples have been collected from all recruited patients, whereas information on dietary habits was obtained from 2400 patients at baseline. These data will constitute a valuable research resource for studies of lifestyle and cardiovascular health long after the trial has been terminated. At Haukeland University Hospital‚s Department of Heart Disease, the biobank also includes data from 2000 cardiac patients not included in WENBIT.
At baseline, about 1300 patients in WENBIT were treated with angioplasty (PCI) and about 650 with bypass surgery. Major substudies include evaluation of restenosis after PCI with repeat angiography and intravascular ultrasound of the treated segment 9 months after the baseline procedure. The angiographic data in these 350 patients will also be used to study the progression of coronary artery disease. Among 40 of these patients, the treatment effects on coronary endothelial function and on atherosclerosis progression (evaluated by intravascular ultrasound) are investigated.

10.4. NOVEL HOMOCYSTEINE DETERMINANTS AND VITAMIN MARKERS
10.4.1. Choline, betaine and related compounds in healthy and hyperhomocysteinemia subjects. The aim of this projects is to investigate choline and betaine status in health and disease, in particular in diseases associated with hyperhomocysteinemia. A LC-MS/MS method for the determination of choline, betaine, dimethylglycine and related compounds in plasma has been developed, and will be used in population based and clinical studies.

10.4.2. Various form of vitamins B2 and B6 in healthy and hyperhomocysteinemia subjects. An assay has been developed which includes 7 vitamin B6 species (pyridoxal phosphate, pyridoxal, pyridoxic acid, pyridoxine, pyridoxine phosphate, pyridoxamine, and pyridoxamine phosphate) and 3 vitamin B2 species (riboflavin, FMN and FAD). This multiplexing assay is based on LC-MS/MS and will be used for the assessment of B6 and B2 status and and health indicators in the NORCCAP, WENBIT and NORVIT biobanks.

10.4.3. Markers of folate status in archival material. Folate is degraded in stored serum/plasma and erythrocyte extract, even when stored in at – 20 oC. Furthermore, there are large inter assay variations between folate methods. We therefore are developing an assay measuring folate equivalents as paraaminobenzoyl-glutamate (PABA-Glu) in serum/plasma after controlled acid hydrolysis. The method is based LC-MS/MS and will also include other folate degradation products.

10.4.4. Alkylchloroformates as general derivatizing reagents in gas chromatography. Alkylchloroformate derivatization allows the simultaneous acylation of amine and thiol groups creating alkoxycarbonyl forms and esterification of carboxylic group. Such a strategy was proposed by Husek in 1995. Simultaneous determination of MMA, tHcy and related metabolites in the same serum or plasma specimen is practical because of the complementarity of these two tests in the diagnostics of cobalamin and folate deficiencies. We are developing methods for such markers, based on derivatization with novel chloroformates (CFs), included halogenated CFs. These analyses are carried out in microtiter plates, using a robotic work station. This project is a collaboration with Drs. Petr Husek (Prague) and Petr Simek (Ceské Budejovice).

10.4.5. Thyroid status. Thyroid status as a strong determinant of plasma homocysteine was first reported by Nedrebø and colleagues in 1998. Several mechanisms have been suggested, including altered renal function or folate status. However, thyroid function affects the metabolism and function of several other B-vitamins involved in homocysteine metabolism, in particular vitamin B2. One projects is investigating change in choline according thyroid function, and the effect modification by genetics and life-style factors.

10.5. PREGNANCY, NEW-BORNS AND CHILDREN
10.5.1. One carbon metabolism from birth to adolescence. Homocysteine levels and B-vitamin status shows marked changes during the first years of life. We study the utility of tHcy and MMA as markers of vitamin function, and the occurrence of B-vitamin deficiency in infancy and childhood. The study includes the investigation of other metabolites, including choline and betaine, in plasma/serum, but also in amniotic fluid. The metabolites are related to birtth weight, and growth and development.

10.5.2. Cobalamin intervention in newborns. There is high prevalence of elevated MMA and tHcy in newborns. Studies are underway which investigate the effect of cobalamin intervention on cobalamin status in newborns, including premature/SGA infants. Other study outcomes are growth and development.

10.5.3. The Norwegian Mother and Child Cohort. This is a joint project of the Bergen and Oslo Departments of the Norwegian Institute of Public Health and is the largest epidemiologic study ever conducted in Norway. The goal of the study is to gain new knowledge on lifestyle and genetic causes of pregnancy complications and adverse outcomes. By mid-2005, the study has recruited and collected data from more than 50,000 pregnant women and their children and 80 % of fathers. The plan is to reach a size of 100,000 women, 70,000 partners and their children in 2008. A project has started August 2005 to study B-vitamin status in a sample of about 3000 pregnant women in the Mother and Child cohort. This is a PhD project funded by the Norwegian Research Council.

10.5.4. Norwegian Orofacial Cleft Study. This data set consists of 574 Norwegian case-parent triads (child, mother, father) and 763 randomly selected controls recruited from the Medical Birth Registry in the period 1996-2001. With 574 cases and complete triads, this study will address intake of folate and other B-vitamins and the risk of orofacial cleft.

10.6. CANCER AND B-VITAMINS
10.6.1. EPIC (European Prospective Investigation into Cancer and Nutrition). This study includes the largest epidemiological biobank in the world with samples collected from > 400,000 European middle aged and elderly men and women from 10 European countries, and with lifestyle/diet information on > 500,000 participants.

10.6.2. JANUS. This is is a Norwegian serum biobank with samples from > 300,000 adults (90 % National Health Screening participants), which have been collected from 1972. The biobank has been used for cancer studies and the largest study ever conducted on colorectal cancer and the methylenetetrahydrofolate polymorphism (MTHFR) was a joint project between the Cancer Registry, the JANUS Biobank and the Homocysteine LOCUS. The JANUS biobank has the potential to be used for a series of important studies of folate and colorectal cancer when the development of the PABA-Glu assay (10.4.3) has been finished.

10.6.3. Norwegian Colorectal Cancer Prevention (NORCCAP). This is a screening study using flexible sigmoidoscopy. It includes extensive clinical data, B-vitamin/homocysteine status and genetic data on > 10000 participants. All key metabolites involved in the B-vitamin network (homocysteine, vitamins B2, B6, B12, betaine, choline, methionine and others) have been measured together with the 13 related SNPs. These data are a rich and unique source for studying the interplay between normal genetic variation and levels of B-vitamin and related metabolites.

10.5.4. The Hordaland Homocysteine Studies. See 10.2.4.