Publications

CIGENE

All CIGENE articles published since the beginning of 2003:

For additional CIGENE related literature and references, you are welcome to search our literature database, CiLit.



2007

Einevoll G, Pettersen KH, Devor A, Ulbert I, Halgren E, Dale AM Laminar population analysis: Estimating firing rates and evoked synaptic activity from multielectrode recordings in rat barrel cortex. Journal of Neurophysiology 97: 2174-2190

Gjuvsland AB, Hayes BJ, Omholt SW, Carlborg Ö Statistical epistasis is a generic feature of gene regulatory networks. Genetics 175:411-420

Hayes B, Lærdahl JK, Lien S, Moen T, Berg P, Hindar K, Davidson WS, Koop BF, Adzhubei A, Høyheim B An extensive resource of single nucleotide polymorphism markers associated with Atlantic salmon (Salmo salar) expressed sequences. Aquaculture, 265: 82-90

Martens H, Bruun SW, Adt I, Sockalingum GD, Kohler A Pre-processing in biochemometrics: Correction for path-length and temperature effects of water in FTIR bio-spectroscopy by EMSC. J. Chemometrics, 20: 402-417

Plahte E, Øyehaug L Pattern-generating travelling waves in a discrete multicellular system with lateral inhibition. Physica D 226: 117–128

Wyller J, Blomquist P, Einevoll GT Turing instability and pattern formation in a two-population neuronal network model. Physica D 225: 75 -93


2006

Anderssen E, Dyrstad K, Westad F, Martens H Reducing over-optimism in variable selection by cross model validation. Chemometrics and Intelligent Laboratory Systems (special issue) 84: 69-74

Árnyasi M, Grindflek E, Jávor A, Lien S Investigation of two candidate genes for meat quality traits in a quantitative trait locus region on SSC6: the porcine short heterodimer partner and heart fatty acid binding protein genes. Journal of Animal Breeding and Genetics 123: 198-203

Bergem M, Norberg K, Roseth A, Meuwissen THE, Lien S, Aamodt R Chimeric honeybees (Apis mellifera) produced by transplantation of embryonic cells into pre-gastrula stage embryos and detection of chimerism by use of microsatellite markers. Molecular Reproduction and Development 73: 475-481

Bergem M, Roseth A, Lien S, Aamodt R Quantitative fluorescent PCR (QF-PCR) on microsatellites, a fast and quantitative method to assay chimeric DNA samples in honeybees (Apis mellifera). Apidologie 37: 556-563

Bertram HC, Kohler A, Böcker U, Ofstad R, Andersen HJ Heat-induced changes in myofibrillar protein structures and myowater of two pork qualities. A Combined FT-IR spectroscopy and low-field NMR relaxometry study. Journal of Agricultural and Food Chemistry 54: 1740-1746

Bitnes J, Martens H, Ueland Ø, Martens M Longitudinal study of taste identification of sensory panellists: Effect of Ageing, Experience and Exposure. Food Quality and Preference 18: 230-241

Böcker U, Ofstad R, Bertram HC, Egelandsdal B, Kohler A Salt-induced changes in pork myofibrillar tissue investigated by FT-IR microspectroscopy and light microscopy. Journal of Agricultural and Food Chemistry 54: 6733-6740

Bruun SW, Kohler A, Adt I, Sockalingum GD, Martens H Correcting attenuated total reflection-fourier transform infrared spectra for water vapor and carbon dioxide. Applied Spectroscopy 60: 1029-1039

Chun I-C, Martens H, Voit EO Parameter estimation in biochemical systems models with alternating regression. Theoretical Biology and Medical Modelling 3:25

Drakhlin ME, Litsyn E, Ponosov A, Stepano E Generalizing the property of locality: atomic/coatomic operators and applications. Journal of Nonlinear and Convex Analysis 7: 139-162

Edvardsen H, Alnæs GIG, Tsalenko A, Mulchahy T, Yuryev A, Lindersson M, Lien S, Omholt SW, Derbyshire RB, Syvänen A-C, Børresen-Dale A-L, Kristensen VN Experimental validation of data mined SNPs from several databases and consecutive dbSNP builds. Pharmacogenetics and Genomics 16: 207-217

Grindflek E, Moe M, Taubert H, Simianer H, Lien S, Moen T Genomewide linkage analysis of inguinal hernia in pigs using affected sib pairs. BMC Genetics 7: 25

Hayes B, Gjuvsland AB, Omholt S Power of QTL mapping experiments in commercial Atlantic salmon populations, exploiting linkage and linkage disequilibrium and effect of limited recombination in males. Heredity 97: 19-26

Hayes B, Hagesæther N, Ådnøy T, Pellerud G, Berg PR, Lien S Effects on production traits of haplotypes among casein genes in Norwegian goats and evidence for a site of preferential recombination. Genetics 174: 455-464

Hayes B, He JIE, Moen T, Bennewitz J Use of molecular markers to maximise diversity of founder populations for aquaculture breeding programs. Aquaculture 255: 573-578

Holtsmark M, Sonesson A, Gjerde B, Klemetsdal G Number of contributing subpopulations and mating design in the base population when establishing a selective breeding program in fish. Aquaculture 258: 241-249

Kadiev R, Ponosov A N.V.Azbelev's W-method in theory of stochastic functional differential equations. Problems of nonlinear Analysis in Engineering Systems 25: 57-89

Kristensen VN, Edvardsen H, Tsalenko A, Nordgard SH, Sørlie T, Sharan R, Vailaya A, Ben-Dor A, Lønning PE, Lien S, Omholt S, Syvanen A-C, Yakhini Z, Børresen-Dale A-L Genetic variation in putative regulatory loci controlling gene expression in breast cancer. PNAS 103: 7735-7740

Litsyn E, Nepomnyashchikh Y, Ponosov A Control of the Lyapunov exponents of dynamical systems in the plane with incomplete observation. Nonlinear Analysis Series A: Theory, Methods & Applications 64: 329-351

Opsal M, Våge DI, Hayes B, Berget, I, Lien S Genomic organization and transcript profiling of the bovine toll-like receptor gene cluster TLR6-TLR1-TLR10. Gene 384: 45-50

Oust A, Moen B, Martens H, Rudi K, Næs T, Kirschner C, Kohler A Analysis of covariance patterns in gene expression data and FT-IR spectra. Journal of Microbiological Methods 65: 573-584

Oust A, Møretrø T, Naterstad K, Sockalingum GD, Adt I, Manfait M, Kohler A Fourier Transform Infrared and Raman Spectroscopy for Characterization of Listeria monocytogenes Strains. Applied and Environmental Microbiology 72: 228-232

Pettersen K, Devor A, Ulbert I, Dale AM, Einevoll, GT Current-source density estimation based on inversion of electrostatic forward solution: Effects of finite extent of neuronal activity and conductivity discontinuities. Journal of Neuroscience Methods 154: 116-133

Ponosov A, Shindiapin A, Nepomnyashchikh Y Stability analysis of systems with switch-like interactions and distributed delays: a case study. Functional Differential Equations 13: 539-570

Rajasingh H, Øyehaug L, Våge DI, Omholt S Carotenoid dynamics in Atlantic salmon. BMC Biology 4: 10

Sandt C, Madoulet C, Kohler A, Allouch P, De Champs C, Manfait M, Sockalingum GD FT-IR microspectroscopy for early identification of some clinically relevant pathogens. Journal of Applied Microbiology 101: 785-797

Solstad T, Moser EI, Einevoll GT From grid cells to place cells: A mathematical modell. Hippocampus 16: 1026-1031

Thennadil S, Martens H, Kohler A Physics-based Multiplicative Scatter Correction Approaches for Improving the Performance of Calibration Models. Applied Spectroscopy 60: 315-321

Wu Z, Bertram HC, Kohler A, Böcker U, Ofstad R, Andersen HJ Influence of aging and salting on protein secondary structures and water distribution in uncooked and cooked pork. A Combined FT-IR microspectroscopy and 1H NMR relaxometry study. Journal of Agricultural and Food Chemistry 54: 8589-8597

Østby I, Øyehaug L, Steen HB A stochastic model of cancer initiation including a bystander effect. Journal of Theoretical Biology 241: 751-764


2005

Bennewitz J, Meuwissen THE A novel method for the estimation of the relative importance of breeds in order to conserve the total genetic variance. Genetics Selection Evolution 37: 339-360

Bennewitz J, Meuwissen THE Estimation of extinction probabilities of five German cattle breeds by population viability analysis. Journal of Dairy Science 88: 2949-2961

Blomquist P, Wyller J, Einevoll GT Localized activity patterns in two-population neuronal networks. Physica D 206: 180-212

Decker M, Væggemose Nielsen P, Martens H NIR spectra of Penicillium camemberti strains separated by Extended Multiplicative Signal Correction (EMSC) improved prediction of physical and chemical variations. Applied Spectroscopy 59: 79-91

Einevoll GT, Plesser HE Response of the difference-of-Gaussians model to circular drifting-grating patches. Visual Neuroscience 22: 437-446

Goddard ME, Meuwissen THE The use of linkage disequilibrium to map quantitative trait loci. Australian Journal of Experimental Agriculture 45: 837-845

Guidugli KR, Nascimento AM, Amdam GV, Barchuk AR, Omholt S, Simões ZLP, Hartfelder K Vitellogenin regulates hormonal dynamics in the worker caste of a eusocial insect. FEBS Letters 579: 4961-4965

Hayes B, Moen T, Goddard M Dissection of genetics of complex traits and progress in aquaculture and livestock species. AgBiotechNet. 7, ABN 136, 10 pp

Hollung K, Øverland M, Hrustic M, Sekulic P, Miladinovic J, Martens H, Narum B, Sahlstrøm S, Sørensen M, Storebakken T, Skrede A Evaluation of nonstarch polysaccharides and oligosaccharide content of different soybean varieties (Glycine max) by Near-Infrared Spectroscopy and Proteomics. Journal of Agricultural and Food Chemistry 53: 9112-9121

Holt M, Meuwissen THE, Vangen O The effect of fast created inbreeding on litter size and body weights in mice. Genetics Selection Evolution 37: 523-537

Holt M, Meuwissen THE, Vangen O Long-term responses, changes in genetic variances and inbreeding depression from 122 generations of selection on increased liter size in mice. Journal of Animal Breeding and Genetics 122: 199-209

Kadiev R, Ponosov A Relations between stability and admissibility for stochastic linear functional differential equations. Functional Differential Equations 12: 209-244

Kent MP, Veiseth E, Therkildsen M, Koohmaraie M An assessment of extraction and assay techniques for quantification of calpain and calpastatin from small tissue samples. Journal of Animal Science 83: 2182-2188

Kirkwood TBL, Feder M, Finch CE, Franceschi C, Globerson A, Klingenberg CP, LaMarco K, Omholt SW, Westendorp RGJ What accounts for the wide variation in life span of genetically identical organisms reared in a constant environment? Mechanisms of Ageing and Development 126: 439-443

Kohler A, Kirschner C, Oust A, Martens H Extended Multiplicative Signal Correction as a tool for separation and characterization of physical and chemical information in Fourier Transform Infrared microscopy images of cryo-sections of beef loin. Applied Spectroscopy 59: 707-716

Kolstad K, Grisdale-Heiland B, Meuwissen THE, Gjerde B Family differences in feed efficiency of Atlantic salmon (Salmo salar): a pilot study. Aquaculture 247: 21-21

Kolstad K, Meuwissen THE, Gjerde B Efficient design for doing genetic studies of feed efficiency in Atlantic salmon (Salmo salar). Aquaculture 247: 153-158

Langaas M, Lindqvist BH, Ferkingstad E Estimating the proportion of true null hypotheses, with application to DNA microarray data. Journal of the Royal Statistical Society, Series B: Statistical Methodology 67: 555–572

Litsyn E, Myasnikova M, Nepomnyashchikh Y, Ponosov A Classification of linear planar systems with hybrid feedback control. Proceedings of the 44th IEEE Conference on Decision and Control (European Control Conference), Seville, Spain, December 12-15, 6522-6526

Litsyn E, Nepomnyashchikh Y, Ponosov A Hybrid feedback stabilization of quasilinear systems in the plane. Journal of Mathematical Analysis and Applications 305: 347-366

Martens H, Anderssen E, Flatberg A, Gidskehaug LH, Høy M, Westad F, Thybo A, Martens M Regression of a data matrix on descriptors of both its rows and of its columns via latent variables: L-PLSR. Computational Statistics & Data Analysis 48: 103-123

Olsen HG, Lien S, Gautier M, Nilsen H, Roseth A, Berg PR, Sundsaasen KK, Svendsen M, Meuwissen THE Mapping of a Milk Production Quantitative Trait Locus to a 420-kb Region on Bovine Chromosome 6. Genetics 169: 275-283

Plahte E, Kjøglum S Analysis and generic properties of gene regulatory networks with graded response functions. Physica D: Nonlinear Phenomena 201: 150-176

Ponosov A Gene regulatory networks and delay differential equations. Special issue of Electronic Journal of Differential Equations 12: 117-141

Ponosov A, Nepomnyashchikh Y, Shindiapin A Stability analysis for systems with logoid-nonlinearities and distributed delay. Transactions of Russian Academy of Natural Sciences 9: 78-94

Sonesson AK, Gjerde B, Meuwissen THE Truncation selection for BLUP-EBV and phenotypic values in fish breeding schemes. Aquaculture 243: 61-68

Sonesson AK, Meuwissen THE Marker-assisted selection in fish breeding schemes. Aquaculture 247: 30-30

Uleberg E, Widerøe IS, Grindflek E, Szyda J, Lien S, Meuwissen THE Fine mapping of a QTL for intramuscular fat on porcine chromosome 6 using combined linkage and linkage disequilibrium mapping. Journal of Animal Breeding and Genetics 122: 1-6

Veflingstad SR, Plahte E, Monk NAM Effect of time delay on pattern formation: competition between homogenisation and pattern formation. Physica D 207: 254-271

Aase ALTO, Amdam GV, Hagen A, Omholt SW A new method for rearing genetically manipulated honey bee workers. Apidologie 36: 293-299


2004

Amdam GV, Hartfelder K, Norberg K, Hagen A, Omholt SW Altered physiology in worker honey bees (Hymenoptera : Apidae) infested with the mite Varroa destructor (Acari : Varroidae): A factor in colony loss during overwintering? Journal of Economic Entomology 97: 741-747

Amdam GV, Simões ZLP, Hagen A, Norberg K, Schrøder K, Mikkelsen Ø, Kirkwood TBL, Omholt SW Hormonal control of the yolk precursor vitellogenin regulates immune function and longevity in honeybees. Experimental Gerontology 39: 767-773

Bink MCAM, Meuwissen THE Finemapping quantitative trait loci using linkage disequilibrium in inbred plant populations. Euphytica 137: 95-99

Bjørnstad Å, Grønnerød S, Mac Key J , Tekauz A, Martens H Resistance to barley scald (Rhynchosporium secalis) in the Ethiopian donor lines ‘Steudelli’ and ‘Jet’, analyzed by Partial Least Squares Regression . Hereditas 141: 149-166

Bjørnstad Å, Westad F, Martens H Analysis of genetic marker- phenotype relationships by partial least squares regression (PLSR). Hereditas 141: 166-179

Færgestad EM, Solheim Flæte NE, Magnus EM, Hollung K , Martens H, Uhelen, A Relationships between Storage Protein Composition, Protein Content, Growing Season and Flour Quality of Bread Wheat. Journal of the Science of Food and Agriculture 84: 877-886

Gianola D, Odegard J, Heringstad B, Klemetsdal G, Sorensen D, Madsen P, Jensen J, Detilleux J Mixture model for inferring susceptibility to mastitis in dairy cattle: a procedure for likelihood-based inference. Genetics Selection Evolution 36: 3-27

Gidskehaug L, Stødkilde-Jørgensen H, Martens H Bridge-PLS Regression: Two-block linear regression without deflations. Journal of Chemometrics 18: 1-8

Grindflek E, Hoen N, Rothschild MF, Plastow G, Szyda J, Sundvold H, Lien S Investigation of Peroxisome Proliferator Activated Receptor g (PPARg) polymorphisms with candidate traits in pigs. Animal Genetics 35: 238-241

Høy M, Westad F, Martens H Improved jackknife variance estimates of bilinear modell parameters. Proceedings in Computational Statistics (J. Antoch, ed) 261-276

Kadiev R, Ponosov A Stability of stochastic functional differential equations and the W-transform. Electronic Journal of Differential Equations 92: 1-36

Krolikowski, Wieslaw, Bang O, Nikolov N, Neshev D, Wyller J, Rasmussen JJ, Edmundson D Modulational instability, solitons and beam propagation in spatially nonlocal nonlinear media. Journal of Optics B: Quantum and Semiclassical Optics 6: S288-S294

Krolikowski, Wieslaw, Bang O, Wyller J Nonlocal incoherent solitons. Physical Review E 70: 036617-036622

Litsyn E, Myasnikova M, Nepomnyashchikh Y, Ponosov A Efficient criteria for stabilization of planar linear systems by hybrid feedback controls. Abstract and Applied Analysis 6: 487-499

Litsyn E, Nepomnyashchikh Y, Ponosov A Control of Lyapunov exponents via hybrid feedback algorithms. Proceedings of the 2nd IFAC Symposium on System, Structure, and Control, Oaxaca, Mexico, 192-197

Meuwissen THE, Goddard ME Bootstrapping of gene-expression data improves and controls the false discovery rate of differentially expressed genes. Genetics Selection Evolution 36: 191-205

Meuwissen THE, Goddard ME Mapping multiple QTL using linkage disequilibrium and linkage analysis information and multitrait data. Genetics Selection Evolution 36: 261-279

Meuwissen THE, Sonesson AK Genotype-assisted optimum contribution selection to maximize selection response over a specified time period. Genetical Research 84: 109-117

Olsen HG, Lien S, Svendsen M, Nilsen H, Roseth A, Aasland M , Meuwissen THE Fine Mapping of Milk Production QTL on BTA 6 by Combined Linkage and Linkage Disequilibrium Analysis. Journal of Dairy Science 87: 690-698

Omholt SW, Amdam GV Epigenetic Regulation of Aging in Honeybee Workers Science of Aging Knowledge Environment 26: pe28. [DOI:10.1126/sageke.2004.26.pe28]

Ponosov A, Stepanov E Invariant measures for generalized random dynamical systems. Fixed Point Theory and its Applications. Yokohama Publishers, Inc. Japan, 1: 227-260

Veflingstad SR, Almeida J, Voit EO Priming non-linear searches for pathway identification. Theoretical Biology and Medical Modelling 1: 8

Windig JJ, Meuwissen THE Rapid haplotype construction in pedigrees with dense marker maps. Journal of Animal Breeding and Genetics 121: 26-39


2003

Amdam GV, Omholt SW The hive bee to forager transition in honeybee colonies: the double repressor hypothesis. Journal of Theoretical Biology 223: 451-464

Amdam GV, Simoes ZLP, Guidugli KR, Norberg K, Omholt SW Disruption of vitellogenin gene function in adult honeybees by intra-abdominal injection of double-stranded RNA. BMC Biotechnology 3: 1

Amdam GV, Norberg K, Hagen A, Omholt SW Social exploitation of vitellogenin. PNAS 100: 1799-1802

Andersen-Ranberg IM, Klemetsdal G, Heringstad B Validation of two animal models for estimation of genetic trends for female fertility in Norwegian dairy cattle. Journal of Dairy Science 86: 4090-4092

Beye M, Hasselmann M, Fondrk MK, Page RE, Omholt SW The gene csd is the primary signal for sexual development in the honeybee and encodes an SR-type protein. Cell 114: 419-429

Eding H, Meuwissen THE Linear methods to estimate kinships from genetic marker data for the construction of core sets in genetic conservation schemes. Journal of Animal Breeding and Genetics 120: 289-302

Hayes B, Goddard ME Evaluation of marker assisted selection in pig enterprises. Livestock Production Science 81: 197-211

Heringstad B, Chang YM, Gianola D, Klemetsdal G Genetic analysis of longitudinal trajectory of clinical mastitis in first-lactation Norwegian cattle. Journal of Dairy Science 86: 2676-2683

Heringstad B, Rekaya R, Gianola D, Klemetsdal G, Weigel KA Bivariate analysis of liability to clinical mastitis and to culling in first-lactation cows. Journal of Dairy Science 86: 653-660

Krolikowski W, Bang O, Wyller J, Rasmussen JJ Optical beams in nonlocal nonlinear media. Acta Physica Polonica A 103: 133-147

Martens H, Høy M, Wise BM, Bro R, Brockhoff PB Pre-whitening of data by covariance-weighted pre-processing. Journal of Chemometrics 17: 153-165

Martens H, Nielsen PJ, Balling Engelsen S Light Scattering and Light Absorbance Separated by Extended Multiplicative Signal Correction. Application to Near-Infrared Transmission Analysis of Powder Mixtures . Analytical Chemistry 75: 394–404

Odegard J, Jensen J, Madsen P, Gianola D, Klemetsdal G, Heringstad B Detection of mastitis in dairy cattle by use of mixture models for repeated somatic cell scores: A Bayesian approach via Gibbs sampling. Journal of Dairy Science 86: 3694-3703

O'Sullivan MG, Byrne DV, Martens H, Gidskehaug LH, Andersen HJ, Martens M Evaluation of pork colour: prediction of visual sensory quality of meat from instrumental and computer vision methods of colour analysis. Meat Science 65: 909-918

Ponosov A, Shindiapin A Azbelev’s W-transform and its applications in mathematical modelling. Differential Equations and Control Processes 4: 1-21

Sonesson AK, Janss LLG, Meuwissen THE Selection against genetic defects in conservation schemes while controlling inbreeding. Genetics Selection Evolution 35: 353-368

Szyda J, Grindflek E, Liu ZT, Lien S Multivariate mixed inheritance models for QTL detection on porcine chromosome 6. Genetical Research 81: 65-73

Westad F, Hersleth M, Lea P, Martens H Variable selection in PCA in sensory descriptive and consumer data. Food Quality And Preference 14: 463-472

Øyehaug L, Plahte E, Omholt SW Targeted reduction of complex models with time scale hierarchy - a case study. Mathematical Biosciences 185: 123-152


Updated: 09.01.07
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