MBI - KB207 - Anvendt bioinformatikk

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KB207 - Anvendt Bioinformatikk
Applied Bioinformatics
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Tentative lecture plan H2002
Lectures are held i Large Aud 2144 on Wednesdays at 12:15-14:00
All relevant information is presented on these web-pages.
Remember to RELOAD to get the latest version of the page.
Plan H2001 .
Last updated: 25-OCT-2002

All exercises are compulsory and written anwsers must be
handed in (KB207-box in Teaching lab, Bioblokken, 2etg).
Godkjenningsliste-kommer her
[ Approved compulsory exercises 2001 ]

Demonstrations at the Faculty PC-lab will be held on Sept. 17., 18., and 19. from 14:00-18:00
Each student participates in one of these sessions.
Tilgang til PC-lab: bruker-ID og passord som for vanlig studentkonto (den du bruker når du sjekker e-post etc.) Ny registrering kan gjøres HER! Se også reglementet for bruk av UiB's EDB-anlegg.

Time	Dato	Emne	Foreleser	Oppgave
1	4.9	Introduksjon Evolusjon Datamaskiner: operativsystem, filer, fil-typer etc. D.Mount: Chapter 1-2	R. Aasland	Web-materiale
2	11.9	Databaser, SRS, Entrez, sekvens- og struktur-databaser, Litteratur D.Mount: Chapter 1-2	R. Aasland	Web-materiale . Obligatorisk oppgave 1 - [Innleverings frist: 24.09.01] Obligatorisk oppgave 2 - [Innleverings frist: 01.10.01]
3	18.9	Global samanstilling av proteinsekvensar D.Mount: (support texts for lecture 3-5): Chap. 3 p.53-89, 92-99 (tot.46) Chap. 4 p.161-165 (tot.5) Chap. 7 p.282-290, 300-309, 315-317, 320-332 (tot.34)	I. Eidhammer	*Compendium for lecture 3-5 and* 7-8 is provided in PDF-format here Obligatorisk oppgave 3 [pdf] - [Innleverings frist: 11.10.02**]
4	25.9	Metodar for søk i sekvensdatabasar	I. Eidhammer	Obligatorisk oppgave 4 [pdf] - [Innleverings frist: 18.10.02]
5	2.10	Scoringsmatriser - profilar	I. Eidhammer
6	9.10	Post-Blast analyse, tolkning av Blast-søk Mønster-gjenkjenning (patterns), Profiler D.Mount: Chapter 7	R. Aasland	Web-materiale Obligatorisk oppgave 5 for lectures 6-8 - [Innleverings frist: 31.10.02]
7	16.10	Multippel sekvens-sammenstilling (alignment) Support texts in D.Mount: Chapter 4 (specially p. 142-160 and p. 173-182 about MEME)	I. Jonassen	Web-material Compendium for lectures 3-5 and 7-8 are provided in PDF-format [and PostScript-format] (see lecture 3). (72 pages) Slides from this lecture. - - - First slide here .-- PDF-versjon av slidene. og en utskriftsvennlig versjon med 6 slides pr. side her. Obligatorisk oppgave 6: Alignment and Phylogeny - [Innleverings frist: 07.11.02]
8	23.10	Estimering av fylogenetiske tre	I. Jonassen	Slides Related links Example
9	30.10	Protein struktur	P. Puntervoll	Web-material to this lecture
10	6.11	Spesielle programmer, Programpakker: GCG, GCK, Phylip etc...	R. Aasland	Web-materiale
11	13.11	Protein evolution: implications for bioinformatics Special topics - discussion - Support texts (D.Mount): Chap. 9 Table 9.1 (p.385), p. 389-398 and p. 402-403.	R. Aasland	Web-materiale
12	20.11	Oppsummering	alle	Links for Summary

A web-page with some information on how to deal with postscript.

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These pages are edited by Rein Aasland . Last updated 3-SEP-2002.
This page was created 12-SEP-1999 Rein Aasland.